GgaEX1055870 @ galGal3
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19580935-19581879:-
Coord C1 exon
chr2:19581789-19581879
Coord A exon
chr2:19581340-19581532
Coord C2 exon
chr2:19580935-19581029
Length
193 bp
Sequences
Splice sites
3' ss Seq
AAATAACTCTTCTTTTGTAGCAA
3' ss Score
5.78
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCTGCTGAGCAGGCAAAAGCAAGTCCAGCCCTCGTTGCCAAAGATCCTGGTGCAGTAGCTAACAAGAAAGAAGAAGAAGATTTAGCTAAAG
Seq A exon
CAATTGAACTGTCACTAAAAGAGCAAAGACAACAGCAAACAACACTTTCCAGTTTGTATCCGAGCACCTCAAGCCTTTTAACAAATCACAAACATGAGGGCCGAAAGGTTCGTGCAATCTATGATTTCGAGGCTGCTGAAGACAACGAATTAACCTTTAAAGCTGGAGAACTTATAACTATCCTCGATGACAG
Seq C2 exon
TGATCCAAATTGGTGGAAAGGTGAAACTCATCAGGGTATAGGATTGTTTCCATCTAATTTTGTAACAGCTGATCTTTCTGCTGAGCCAGAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.308 C2=0.333
Domain overlap (PFAM):
C1:
PF0280915=UIM=PU(50.0=29.0)
A:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
C2:
PF0001823=SH3_1=PD(39.1=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGCAGGCAAAAGCAAG
R:
CTGGCTCAGCAGAAAGATCAGC
Band lengths:
178-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]