MmuEX6099043 @ mm10
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14128546-14131118:+
Coord C1 exon
chr2:14128546-14128636
Coord A exon
chr2:14128979-14129171
Coord C2 exon
chr2:14131024-14131118
Length
193 bp
Sequences
Splice sites
3' ss Seq
TAAACTCTCACTGTTTGCAGCTA
3' ss Score
7.33
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTAGCCAAGGACCCTGGGACTGTGGCTACCAAAAAGGAAGAAGAAGATTTAGCCAAAG
Seq A exon
CTATTGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGCCCCCGTGTCCACGCTGTACCCCAGCACATCTAACCTCCTCACTAACCACCAGCACGAAGGCAGGAAAGTCCGCGCCGTGTACGATTTTGAAGCCGCTGAGGATAATGAGCTTACCTTTAAAGCTGGAGAAATCATTACAGTCCTTGATGACAG
Seq C2 exon
TGATCCCAACTGGTGGAAAGGTGAAACCCATCAAGGCGTGGGGCTTTTTCCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAACCAGAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'20-19,'20-16,23-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.447 C2=0.327
Domain overlap (PFAM):
C1:
PF0280915=UIM=PU(50.0=29.0)
A:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
C2:
PF0001823=SH3_1=PD(39.1=54.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGAACAAGCAAAAGCA
R:
TCATTTCTGGTTCAGCAGTAAGA
Band lengths:
186-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types