BtaEX0034788 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002658 | STAM
Description
Bos taurus signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), mRNA. [Source:RefSeq mRNA;Acc:NM_001076842]
Coordinates
chr13:32431558-32445156:+
Coord C1 exon
chr13:32431558-32431652
Coord A exon
chr13:32435432-32435520
Coord C2 exon
chr13:32444523-32445156
Length
89 bp
Sequences
Splice sites
3' ss Seq
AATTGTTACATGTTTTTCAGTTA
3' ss Score
6.5
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGACCCCAACTGGTGGAAAGGGGAAACCCATCAAGGCATGGGGCTCTTCCCTTCAAATTTTGTGACTGCAGATCTCACTGTTGAGCCTGAAATGA
Seq A exon
TTAAAACAGAGAAGAAGACGGTACAATTTAGTGATGAAGTTCAGGTAGAAACGATAGAACCAGAGCCAGAACCAGCCTACATTGATGAG
Seq C2 exon
CACAATGGTCAGCTCCGTCCCGGGAAGTACGTATCCCAGCCAGGCTTCAGTGTACAGTCCTCCCCCTGCTGCCACAGCTGCTCCCGACGTCACCATCTACCAGAACACAGGGACCAGCCTGTCCCAGGTGCCGAACTATACATTACCGTCCACACTGCCCCAGCCTGGGGGCAGCCAGCAGCCACCTCAGCCGCAGCAGCCGTACTCCCAGAAGGCTCTGCTATAGGACTGGAGTCCCCTTTGTGGCAAATACCCGCCGATCGCCAATGGCAATGTTACGAGATTCTTTAATATCTTAAGATTGGTTTACCCTCAGCTTATAGGAATCGTATCTTGGTCAACACGTTCCAATGTTCAAGAAGGGAGATCCCTCTTCAATTTGCACTGACTTTTTAGAGAGTCTCCCCTCCCCTCCCCTGTGAGGAATGAAACTACTTACAACATATAATTCCTTTCATAATATGAAAGGGTCAATGCAAGATTATCTGTCTCGTAAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002658_MULTIEX1-9/13=8-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.867 C2=0.947
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTGCAGATCTCACTGT
R:
TATAGTTCGGCACCTGGGACA
Band lengths:
175-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development