GgaEX6018775 @ galGal3
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19578325-19581029:-
Coord C1 exon
chr2:19580935-19581029
Coord A exon
chr2:19579990-19580078
Coord C2 exon
chr2:19578325-19578412
Length
89 bp
Sequences
Splice sites
3' ss Seq
GCTGCCTATTTATCTTACAGTGA
3' ss Score
8.15
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TGATCCAAATTGGTGGAAAGGTGAAACTCATCAGGGTATAGGATTGTTTCCATCTAATTTTGTAACAGCTGATCTTTCTGCTGAGCCAGAAATGA
Seq A exon
TGAAAACTGAGAAGAAAACAGTGCAGTTCAGTGATGAAGTTCAAGTAGAAACAATAGAACCTGAGCCTGAGCCAGTTTATATTGATGAA
Seq C2 exon
GATAAAATGGACCAGCTCCTGCAGATGTTGCAAAGTGCAGATCCAACTGACGACCAGCCAGACCTCCCAGAATTACTTCATCTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.900 C2=0.800
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAATTGGTGGAAAGGTGA
R:
AGTAATTCTGGGAGGTCTGGCT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]