DreEX6027579 @ danRer10
Exon Skipping
Gene
ENSDARG00000002127 | stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:ZFIN;Acc:ZDB-GENE-031118-123]
Coordinates
chr2:31464723-31465507:+
Coord C1 exon
chr2:31464723-31464817
Coord A exon
chr2:31465218-31465306
Coord C2 exon
chr2:31465420-31465507
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCACATTCATCTTTCCTCAGTGA
3' ss Score
7.44
5' ss Seq
GAGGCAAGA
5' ss Score
2.31
Exon sequences
Seq C1 exon
TGACCCTAACTGGTGGAAAGGTGAGACATATCAGGGTGTTGGGCTTTTTCCGTCAAACTTTGTGACAGCGGACCTGACAGCAGAGCCTGAGATGA
Seq A exon
TGAAAACAGAGAAGAAGACTGTGCAGTTTAGTGAAGAAGTCCAAGTAGAGACGATTGAACCAGAACCAGAGCCTGCCTACATTGATGAG
Seq C2 exon
GAGAAAATGGACCAGCTGCTTCAGATGATCCAGAGTGCAGACCCGACAGATGACCAGTCAGACACCTGTGAGCTCCTACAGTTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002127-'13-14,'13-11,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.933 C2=0.733
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
PF031279=GAT=PU(1.2=3.3)
C2:
PF031279=GAT=FE(36.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTAACTGGTGGAAAGGTGA
R:
GGAGCTCACAGGTGTCTGACT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]