RnoEX6054231 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81240903-81247485:+
Coord C1 exon
chr17:81240903-81240997
Coord A exon
chr17:81244429-81244523
Coord C2 exon
chr17:81247398-81247485
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATCTCTCTTTTCAGTTA
3' ss Score
11.12
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
TGATCCCAACTGGTGGAAAGGTGAAACACATCAAGGCATGGGGCTTTTTCCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAACCGGAAATGA
Seq A exon
TTAAGACAGAGAAGAAGACGGTACAATTCAGTGACGATGTTCAGATAGAGACAATAGAACCAGAACCAGAACCGGAACCAGCCTTCATTGATGAG
Seq C2 exon
GATAAAATGGACCAGTTGCTACAGATGTTGCAAAGTACAGATCCCAGCGATAATCAGCCAGACTTACCAGAGCTACTTCATCTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'16-20,'16-18,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.906 C2=0.900
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTGGAAAGGTGAAACACA
R:
TCGAGATGAAGTAGCTCTGGT
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]