MmuEX6099041 @ mm9
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14052651-14059201:+
Coord C1 exon
chr2:14052651-14052745
Coord A exon
chr2:14055980-14056068
Coord C2 exon
chr2:14059114-14059201
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTTTATGTATTTTTTTCAGTTA
3' ss Score
9.62
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGATCCCAACTGGTGGAAAGGTGAAACCCATCAAGGCGTGGGGCTTTTTCCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAACCAGAAATGA
Seq A exon
TTAAAACAGAGAAGAAGACGGTACAGTTCAATGATGATGTTCAGATAGAGACAATAGAACCAGAACCAGAACCAGCCTTTATTGATGAG
Seq C2 exon
GATAAAATGGACCAGTTGTTACAGATGTTGCAAAGTACAGATCCTAGTGATAATCAGCCAGACTTGCCAGAGCTGCTTCATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'16-19,'16-17,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.867 C2=0.833
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTGGAAAGGTGAAACCC
R:
ATGAAGCAGCTCTGGCAAGTC
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: