BtaEX0035084 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003525 | STXBP1
Description
Bos taurus syntaxin binding protein 1 (STXBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174619]
Coordinates
chr11:98375376-98378524:+
Coord C1 exon
chr11:98375376-98375441
Coord A exon
chr11:98376418-98376498
Coord C2 exon
chr11:98378386-98378524
Length
81 bp
Sequences
Splice sites
3' ss Seq
CACACTCTATTTTGTCCTAGTAT
3' ss Score
6.21
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACCACCATGCGGGACCTGTCCCAGATGCTGAAGAAGATGCCCCAGTACCAGAAAGAGCTCAGCAAG
Seq A exon
TATTCGACCCACCTGCACCTCGCCGAGGACTGTATGAAGCATTACCAAGGCACTGTGGATAAGCTCTGCCGGGTGGAACAG
Seq C2 exon
GACCTGGCCATGGGCACGGATGCTGAAGGGGAGAAGATCAAGGACCCCATGAGAGCCATCGTCCCCATTCTGCTGGATGCAAATGTCAGCACTTATGACAAAATCCGCATCATCCTTCTCTACATCTTTTTGAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003525_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100),PF140711=YlbD_coat=FE(21.0=100)
A:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(26.0=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(1.0=2.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTCCCAGATGCTGAAGA
R:
TGTAGAGAAGGATGATGCGGA
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development