GgaEX6014905 @ galGal4
Exon Skipping
Gene
ENSGALG00000007196 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr17:2443112-2443609:+
Coord C1 exon
chr17:2443112-2443177
Coord A exon
chr17:2443301-2443381
Coord C2 exon
chr17:2443471-2443609
Length
81 bp
Sequences
Splice sites
3' ss Seq
CGCCACTCGTGTCTCTGCAGTAC
3' ss Score
6.83
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACCACCATGAGGGACCTGTCCCAGATGCTGAAGAAGATGCCACAGTACCAGAAGGAGCTGAGCAAG
Seq A exon
TACTCCACTCACCTGCACCTGGCCGAGGACTGCATGAAGCACTACCAGGGCACGGTGGACAAGCTGTGCCGAGTGGAACAG
Seq C2 exon
GACCTGGCCATGGGCACCGATGCTGAAGGCGAGAAGATCAAAGACCCCATGAGGGCCATTGTCCCCATCCTGCTGGATGGGAACGTCAGCACCTACGACAAGATCCGCATCATCCTGCTGTACATCTTCCTGAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007196-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100),PF140711=YlbD_coat=FE(21.0=100)
A:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(26.0=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(1.0=2.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTCCCAGATGCTGAAGA
R:
GCAGGATGATGCGGATCTTGT
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]