RnoEX0087354 @ rn6
Exon Skipping
Gene
ENSRNOG00000015420 | Stxbp1
Description
syntaxin binding protein 1 [Source:RGD Symbol;Acc:3785]
Coordinates
chr3:11837387-11840838:-
Coord C1 exon
chr3:11840773-11840838
Coord A exon
chr3:11840167-11840247
Coord C2 exon
chr3:11837387-11837525
Length
81 bp
Sequences
Splice sites
3' ss Seq
GACTCTTGTGCTTCTCCTAGTAT
3' ss Score
5.68
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACCACCATGCGGGACCTGTCCCAGATGCTGAAGAAAATGCCCCAGTACCAGAAGGAGCTCAGCAAG
Seq A exon
TATTCGACTCACCTGCACCTTGCTGAAGACTGTATGAAGCATTACCAAGGCACCGTAGACAAACTCTGCCGCGTGGAGCAG
Seq C2 exon
GACCTGGCGATGGGCACAGATGCTGAGGGGGAAAAAATCAAGGACCCCATGAGAGCCATTGTCCCCATCCTGCTGGATGCAAATGTCAGCACTTATGACAAAATTCGCATCATCCTTCTCTACATCTTCCTGAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015420-'27-29,'27-25,29-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100),PF140711=YlbD_coat=FE(21.0=100)
A:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(26.0=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(1.0=2.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTCCCAGATGCTGAAGA
R:
GGAAGATGTAGAGAAGGATGATGCG
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]