MmuEX6100640 @ mm9
Exon Skipping
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32658274-32662306:-
Coord C1 exon
chr2:32662241-32662306
Coord A exon
chr2:32661589-32661669
Coord C2 exon
chr2:32658274-32658412
Length
81 bp
Sequences
Splice sites
3' ss Seq
GATTCTTGTGCTTCCCCTAGTAT
3' ss Score
6.86
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
ACCACCATGCGGGACCTGTCCCAGATGCTGAAGAAAATGCCCCAGTACCAGAAGGAGCTCAGCAAG
Seq A exon
TATTCGACTCACCTGCACCTTGCTGAAGACTGCATGAAGCATTACCAAGGCACTGTAGACAAACTCTGCCGCGTGGAGCAG
Seq C2 exon
GACCTGGCAATGGGCACAGATGCTGAGGGGGAAAAAATCAAGGACCCCATGAGAGCCATTGTCCCCATCCTGCTGGATGCGAACGTCAGCACTTACGACAAAATCCGTATCATCCTTCTCTACATCTTCCTGAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100),PF140711=YlbD_coat=FE(21.0=100)
A:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(26.0=100)
C2:
PF0099518=Sec1=FE(11.0=100),PF140711=YlbD_coat=PD(1.0=2.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTCCCAGATGCTGAAGA
R:
AGGATGATACGGATTTTGTCGT
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: