DreEX6083583 @ danRer10
Exon Skipping
Gene
ENSDARG00000001994 | stxbp1a
Description
syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
Coordinates
chr21:13803757-13809518:+
Coord C1 exon
chr21:13803757-13803822
Coord A exon
chr21:13805770-13805850
Coord C2 exon
chr21:13809380-13809518
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTGTGTCTAGTAC
3' ss Score
7.13
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
ACCACCATGAGGGATCTGTCTCAAATGCTGAAGAAGATGCCGCAGTATCAGAAAGAGCTCAGCAAG
Seq A exon
TACTCAACTCATCTGCAGCTGGCTGAGGATTGCATGAAGCACTACCAGGGAACTGTGGACAAACTATGCCGTGTTGAGCAG
Seq C2 exon
GATCTCGCAATGGGAACAGATGCTGAGGGTGAGAAGATTAAAGACCCCATGAGGGCCATCGTGCCAATCTTGCTGGATGCCAATGTCACCACCTATGACAAGATCCGCATCATCCTGCTCTACATTTTCCTCAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001994-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100),PF140711=YlbD_coat=FE(18.6=100)
A:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(23.0=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(0.9=2.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATGAGGGATCTGTCTCA
R:
GCAGGATGATGCGGATCTTGT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]