BtaEX0035096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007330 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:HGNC:11446]
Coordinates
chr3:34694270-34696503:-
Coord C1 exon
chr3:34696423-34696503
Coord A exon
chr3:34695360-34695498
Coord C2 exon
chr3:34694270-34694376
Length
139 bp
Sequences
Splice sites
3' ss Seq
TATATTTCATTTTCATTAAGGAC
3' ss Score
5.98
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
CAAGTTGTTCATCTTAACTTAGCAGAAGATTGCATGAATAAGTTCAAGCCTAATATAGAAAAGCTCTGCAAAACTGAACAG
Seq A exon
GACCTGGCACTTGGGACTGATGCAGAAGGACAGAAAGTCAAAGATGCTATGCGAGTACTCCTTCCAGTTCTACTCAGTAAAAATCATGATAATTATGATAAAATAAGAGCAATCCTACTTTATATCTTCAGTATTAATG
Seq C2 exon
GAACTACAGAAGAAAACTTGGACAGATTGATCCAGAATGTAAAGATAGAAAATGAGAGTGACATGATTCGTAACTGGAGCTACCTCGGTGTTCCCATTGTCCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007330_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.056
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.8=100)
A:
PF0099518=Sec1=FE(8.4=100)
C2:
PF0099518=Sec1=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTGTTCATCTTAACTTAGCAGA
R:
AACACCGAGGTAGCTCCAGTT
Band lengths:
173-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development