RnoEX0087383 @ rn6
Exon Skipping
Gene
ENSRNOG00000020392 | Stxbp3
Description
syntaxin binding protein 3 [Source:RGD Symbol;Acc:619968]
Coordinates
chr2:211602604-211606619:-
Coord C1 exon
chr2:211606554-211606619
Coord A exon
chr2:211603969-211604107
Coord C2 exon
chr2:211602604-211602696
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTGACTGTCATTAGGAC
3' ss Score
5.65
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
ACGTCACTCAGCGCGCTTACCCAGCTGATGAAAAAGATGCCGCACTTCCGGAAACAGATCTCGAAG
Seq A exon
GACCTGGCACTTGGAACAGATGCGGAAGGCCAGCGGGTAAAGGACTCCATGCTGGTGCTCCTCCCAGTGCTGCTCAACAAAAACCACGACAACTGCGACAAAATACGGGCAGTCTTGCTCTACATCTTCGGTGTTAATG
Seq C2 exon
TCCCAACAAGCCAAACCACCAAGAAAAGATCGGTCTGCCGAAGAGACTTTTCAGCTTTCTCGATGGACACCTTTTATCAAAGATATCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020392_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.452
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100)
A:
PF0099518=Sec1=FE(8.4=100)
C2:
PF0099518=Sec1=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTCAGCGCGCTTACC
R:
TCTTTGATAAAAGGTGTCCATCGAGA
Band lengths:
147-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]