GgaEX6043427 @ galGal4
Exon Skipping
Gene
ENSGALG00000002001 | STXBP3
Description
syntaxin-binding protein 3 [Source:RefSeq peptide;Acc:NP_001073202]
Coordinates
chr8:1279845-1282058:+
Coord C1 exon
chr8:1279845-1279925
Coord A exon
chr8:1281194-1281332
Coord C2 exon
chr8:1281952-1282058
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTGTTTGTAATTTAGGAC
3' ss Score
8.84
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CAAGTTGTCCATCTTAATATAGCAGAAGACTGCATGAGCAAGTTCAAAGCTAACATAGAAAGGCTTTGTAAAACTGAACAG
Seq A exon
GACTTGGCTCTTGGAACTGATGCAGAAGGTCAAAAAGTGAAGGACACCATGAGAGTCCTCCTTCCGGTTCTGCTTAACAAAAGTCATGACAGCTATGATAAAATTAGAGCTATTCTCCTGTATATCTTCAGTACAAATG
Seq C2 exon
GAACTACCGAGGAGAACTTGGACAAGCTGATCCAGAATGTGCAAATAGAAAGTGATAGTGATATGATAAGAAACTGGGAATACCTTCATGTTCCTATTACCAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.111
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.8=100)
A:
PF0099518=Sec1=FE(8.4=100)
C2:
PF0099518=Sec1=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTGTCCATCTTAATATAGCAGA
R:
TGAATTGGTAATAGGAACATGAAGGT
Band lengths:
188-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]