MmuEX6073470 @ mm9
Exon Skipping
Gene
ENSMUSG00000027882 | Stxbp3a
Description
syntaxin binding protein 3A [Source:MGI Symbol;Acc:MGI:107362]
Coordinates
chr3:108602973-108605109:-
Coord C1 exon
chr3:108605029-108605109
Coord A exon
chr3:108603653-108603791
Coord C2 exon
chr3:108602973-108603079
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTTACTGTCCTTAGGAC
3' ss Score
8.47
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
CAAGTAGTCCATCTTAACTTAGCTGAAGACTGCATGAATAAGTTTAAGCTGAATATTGAGAAGCTCTGCAAAACTGAGCAG
Seq A exon
GACCTGGCACTTGGAACAGATGCTGAAGGCCAGCGGGTGAAGGACTCCATGCTGGTGCTCCTCCCAGTGCTGCTCAACAAAAACCATGACAACTGCGACAAAATACGGGCAGTCCTGCTCTACATCTTCGGGATTAATG
Seq C2 exon
GAACCACTGAAGAAAATCTGGACAGACTGATCCACAATGTAAAGATAGAAGATGATAGTGATATGATTCGTAACTGGAGCCACCTTGGTGTTCCCATTGTTCCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027882-'16-23,'16-22,18-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.8=100)
A:
PF0099518=Sec1=FE(25.1=100)
C2:
PF0099518=Sec1=FE(19.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTAGTCCATCTTAACTTAGCTGA
R:
CACCAAGGTGGCTCCAGTTAC
Band lengths:
171-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: