MmuEX6073470 @ mm10
Exon Skipping
Gene
ENSMUSG00000027882 | Stxbp3
Description
syntaxin binding protein 3 [Source:MGI Symbol;Acc:MGI:107362]
Coordinates
chr3:108800055-108802191:-
Coord C1 exon
chr3:108802111-108802191
Coord A exon
chr3:108800735-108800873
Coord C2 exon
chr3:108800055-108800161
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTTACTGTCCTTAGGAC
3' ss Score
8.47
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
CAAGTAGTCCATCTTAACTTAGCTGAAGACTGCATGAATAAGTTTAAGCTGAATATTGAGAAGCTCTGCAAAACTGAGCAG
Seq A exon
GACCTGGCACTTGGAACAGATGCTGAAGGCCAGCGGGTGAAGGACTCCATGCTGGTGCTCCTCCCAGTGCTGCTCAACAAAAACCATGACAACTGCGACAAAATACGGGCAGTCCTGCTCTACATCTTCGGGATTAATG
Seq C2 exon
GAACCACTGAAGAAAATCTGGACAGACTGATCCACAATGTAAAGATAGAAGATGATAGTGATATGATTCGTAACTGGAGCCACCTTGGTGTTCCCATTGTTCCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027882-'33-26,'33-25,35-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.8=100)
A:
PF0099518=Sec1=FE(8.4=100)
C2:
PF0099518=Sec1=FE(6.4=100)
Main Skipping Isoform:
ENSMUST00000102621fB3973
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTAGTCCATCTTAACTTAGCTGA
R:
CACCAAGGTGGCTCCAGTTAC
Band lengths:
171-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types