DreEX6078692 @ danRer10
Exon Skipping
Gene
ENSDARG00000008142 | stxbp3
Description
syntaxin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2833]
Coordinates
chr23:1673314-1678997:+
Coord C1 exon
chr23:1673314-1673394
Coord A exon
chr23:1675406-1675541
Coord C2 exon
chr23:1678891-1678997
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTGATTTCTGTGTTTTTCAGGAT
3' ss Score
11.94
5' ss Seq
ATGGTGGAT
5' ss Score
-1.34
Exon sequences
Seq C1 exon
AAAACCGTGCACCTACATTTAGCCGAGGATCTGATGGGCCATTACCAGAAGAACGTGGAGAAACTCTGCAAAGCGGAGCAG
Seq A exon
GATCTGGCTGTCGGTGCAGACGCTGAGGGACAGAAGGTTAAAGACCCCATGCGGACGCTGCTTCCTGTGCTTTTACACCAGCACGACACCACCGACAAGATCCGCGCCGTCCTGCTCTACATCTTCAGCCTCAATG
Seq C2 exon
GTACGACAACGGAGAATCTGAATAAACTGATTCAGAATGTGAAAATCGAGGATAAGGACGGCTACATCCAGAACTGGAACCAGCTGGGAGTCCCCATCCTCTCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008142-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.087 C2=0.056
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.8=100),PF083765=NIT=FE(17.7=100)
A:
PF0099518=Sec1=FE(8.3=100),PF083765=NIT=FE(30.6=100)
C2:
PF0099518=Sec1=FE(6.4=100),PF083765=NIT=PD(13.6=55.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGTGCACCTACATTTAGCC
R:
CGAGGAGAGGATGGGGACTC
Band lengths:
186-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]