RnoEX0087382 @ rn6
Exon Skipping
Gene
ENSRNOG00000020392 | Stxbp3
Description
syntaxin binding protein 3 [Source:RGD Symbol;Acc:619968]
Coordinates
chr2:211602604-211606619:-
Coord C1 exon
chr2:211606554-211606619
Coord A exon
chr2:211605377-211605457
Coord C2 exon
chr2:211602604-211602696
Length
81 bp
Sequences
Splice sites
3' ss Seq
CAGTGTCCTCTGGTTTTCAGCAA
3' ss Score
5.93
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACGTCACTCAGCGCGCTTACCCAGCTGATGAAAAAGATGCCGCACTTCCGGAAACAGATCTCGAAG
Seq A exon
CAAGTCGTCCATCTTAACCTAGCTGAAGACTGCATGAATAAGTTTAAGCTGAATATTGAGAAGCTCTGCAAAACTGAGCAG
Seq C2 exon
TCCCAACAAGCCAAACCACCAAGAAAAGATCGGTCTGCCGAAGAGACTTTTCAGCTTTCTCGATGGACACCTTTTATCAAAGATATCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020392_MULTIEX1-1/4=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.452
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100)
A:
PF0099518=Sec1=FE(4.8=100)
C2:
PF0099518=Sec1=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCACTCAGCGCGCTTA
R:
TATCTTTGATAAAAGGTGTCCATCGA
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]