DreEX0076294 @ danRer10
Exon Skipping
Gene
ENSDARG00000008142 | stxbp3
Description
syntaxin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2833]
Coordinates
chr23:1670809-1675541:+
Coord C1 exon
chr23:1670809-1670874
Coord A exon
chr23:1673314-1673394
Coord C2 exon
chr23:1675406-1675541
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCCATGTTTTTCTCTCTCAGAAA
3' ss Score
10.31
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATCACAATCGGAGCCCTTTCACAGCTCATGAAGAAGATGCCAGCTTTCCGCAAGCAAGTGACACAG
Seq A exon
AAAACCGTGCACCTACATTTAGCCGAGGATCTGATGGGCCATTACCAGAAGAACGTGGAGAAACTCTGCAAAGCGGAGCAG
Seq C2 exon
GATCTGGCTGTCGGTGCAGACGCTGAGGGACAGAAGGTTAAAGACCCCATGCGGACGCTGCTTCCTGTGCTTTTACACCAGCACGACACCACCGACAAGATCCGCGCCGTCCTGCTCTACATCTTCAGCCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008142-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.9=100),PF083765=NIT=FE(14.3=100)
A:
PF0099518=Sec1=FE(4.8=100),PF083765=NIT=FE(17.7=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF083765=NIT=FE(30.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAATCGGAGCCCTTTCAC
R:
GATCTTGTCGGTGGTGTCGTG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]