MmuEX0045630 @ mm9
Exon Skipping
Gene
ENSMUSG00000027882 | Stxbp3a
Description
syntaxin binding protein 3A [Source:MGI Symbol;Acc:MGI:107362]
Coordinates
chr3:108603653-108606529:-
Coord C1 exon
chr3:108606464-108606529
Coord A exon
chr3:108605029-108605109
Coord C2 exon
chr3:108603653-108603791
Length
81 bp
Sequences
Splice sites
3' ss Seq
CAGTGTCTTCTGGTTTTCAGCAA
3' ss Score
6.08
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACATCACTTAGCGCTCTTACCCAGCTGATGAAAAAGATGCCGCACTTCCGAAAGCAGATCTCGAAG
Seq A exon
CAAGTAGTCCATCTTAACTTAGCTGAAGACTGCATGAATAAGTTTAAGCTGAATATTGAGAAGCTCTGCAAAACTGAGCAG
Seq C2 exon
GACCTGGCACTTGGAACAGATGCTGAAGGCCAGCGGGTGAAGGACTCCATGCTGGTGCTCCTCCCAGTGCTGCTCAACAAAAACCATGACAACTGCGACAAAATACGGGCAGTCCTGCTCTACATCTTCGGGATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027882_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.7=100),PF0099518=Sec1=PU(1.6=13.6)
A:
PF0099518=Sec1=FE(4.8=100)
C2:
PF0099518=Sec1=FE(25.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCGCTCTTACCCAGCTGAT
R:
TGCCCGTATTTTGTCGCAGTT
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: