GgaEX1056314 @ galGal3
Exon Skipping
Gene
ENSGALG00000002001 | STXBP3
Description
NA
Coordinates
chr8:1290346-1292323:+
Coord C1 exon
chr8:1290346-1290411
Coord A exon
chr8:1290836-1290916
Coord C2 exon
chr8:1292185-1292323
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGGATTTTCTGTCTCCTAGCAA
3' ss Score
5.71
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TTAACGTTGTCCGGTCTGGCCCACTTAATGAAAAAGATGCCACAGTATCGTAAGGAGATCACTAGG
Seq A exon
CAAGTTGTCCATCTTAATATAGCAGAAGACTGCATGAGCAAGTTCAAAGCTAACATAGAAAGGCTTTGTAAAACTGAACAG
Seq C2 exon
GACTTGGCTCTTGGAACTGATGCAGAAGGTCAAAAAGTGAAGGACACCATGAGAGTCCTCCTTCCGGTTCTGCTTAACAAAAGTCATGACAGCTATGATAAAATTAGAGCTATTCTCCTGTATATCTTCAGTACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001-'21-20,'21-18,22-20=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100)
A:
PF0099518=Sec1=FE(4.8=100)
C2:
PF0099518=Sec1=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACGTTGTCCGGTCTGGC
R:
TTATCATAGCTGTCATGACTTTTGTT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]