DreEX6011199 @ danRer10
Exon Skipping
Gene
ENSDARG00000056036 | stxbp1b
Description
syntaxin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-060531-166]
Coordinates
chr5:28392503-28392951:+
Coord C1 exon
chr5:28392503-28392568
Coord A exon
chr5:28392650-28392730
Coord C2 exon
chr5:28392813-28392951
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTTTATGATGATCTTCCAGTAC
3' ss Score
6.15
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACCACCATGAAAGAGCTCTCCCAGATGCTTAAAAAGATGCCACAGTACCAGAAAGAGTTAAGCAAG
Seq A exon
TACTCAACTCATCTGCACTTAGCAGAAGACTGCATGAAGCAGTACCAGGGCACAGTGGACAAACTGTGTCGTGTTGAGCAG
Seq C2 exon
GATCTAGCTATGGGCACAGATGCGGAGGGTGAGAAGATTAAAGATCCCATGAGAGCCATTGTACCCATTCTACTGGACGCTACTGTCACCATCATGGACAAGATCCGCATCATCCTGCTCTATATTTTCCTCAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056036-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.8=100),PF140711=YlbD_coat=FE(21.0=100),PF0396210=Mnd1=FE(15.8=100)
A:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(26.0=100),PF0396210=Mnd1=FE(19.5=100)
C2:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(1.0=2.1),PF0396210=Mnd1=FE(34.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATGAAAGAGCTCTCCC
R:
GCAGGATGATGCGGATCTTGT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]