HsaEX6032524 @ hg19
Exon Skipping
Gene
ENSG00000116266 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:11446]
Coordinates
chr1:109336204-109338994:+
Coord C1 exon
chr1:109336204-109336269
Coord A exon
chr1:109337449-109337529
Coord C2 exon
chr1:109338856-109338994
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGATTTCTTCTGTTTTTCAGCAA
3' ss Score
8.6
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACATCACTTAGTGCTCTTACCCAGCTGATGAAAAAGATGCCCCATTTCCGAAAACAGATTACTAAG
Seq A exon
CAAGTTGTCCATCTTAACTTAGCAGAAGATTGCATGAATAAGTTCAAGCTTAATATAGAAAAGCTCTGCAAAACTGAACAG
Seq C2 exon
GACCTGGCACTTGGAACTGATGCAGAAGGACAGAAGGTGAAAGATTCCATGCGAGTACTCCTTCCAGTTCTACTCAACAAAAATCATGATAATTGTGATAAAATAAGAGCAATTCTACTTTATATCTTCAGTATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116266-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.9=100)
A:
PF0099518=Sec1=FE(4.8=100)
C2:
PF0099518=Sec1=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTAGTGCTCTTACCCAGCT
R:
CATGATTTTTGTTGAGTAGAACTGGA
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)