BtaEX6016177 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007330 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:HGNC:11446]
Coordinates
chr3:34695360-34697349:-
Coord C1 exon
chr3:34697284-34697349
Coord A exon
chr3:34696423-34696503
Coord C2 exon
chr3:34695360-34695498
Length
81 bp
Sequences
Splice sites
3' ss Seq
GATTTTTTTCTGTTTTTCAGCAA
3' ss Score
9.35
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACATCACTTAGTGCTCTTACCCAGCTGATGAAAAAGATGCCTCATTTCCGTAAACAGATTACTAAG
Seq A exon
CAAGTTGTTCATCTTAACTTAGCAGAAGATTGCATGAATAAGTTCAAGCCTAATATAGAAAAGCTCTGCAAAACTGAACAG
Seq C2 exon
GACCTGGCACTTGGGACTGATGCAGAAGGACAGAAAGTCAAAGATGCTATGCGAGTACTCCTTCCAGTTCTACTCAGTAAAAATCATGATAATTATGATAAAATAAGAGCAATCCTACTTTATATCTTCAGTATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007330-'14-20,'14-18,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.9=100)
A:
PF0099518=Sec1=FE(4.8=100)
C2:
PF0099518=Sec1=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTAGTGCTCTTACCCAGCT
R:
CATGATTTTTACTGAGTAGAACTGGA
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]