HsaEX6032524 @ hg38
Exon Skipping
Gene
ENSG00000116266 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:HGNC:11446]
Coordinates
chr1:108793582-108796372:+
Coord C1 exon
chr1:108793582-108793647
Coord A exon
chr1:108794827-108794907
Coord C2 exon
chr1:108796234-108796372
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGATTTCTTCTGTTTTTCAGCAA
3' ss Score
8.6
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACATCACTTAGTGCTCTTACCCAGCTGATGAAAAAGATGCCCCATTTCCGAAAACAGATTACTAAG
Seq A exon
CAAGTTGTCCATCTTAACTTAGCAGAAGATTGCATGAATAAGTTCAAGCTTAATATAGAAAAGCTCTGCAAAACTGAACAG
Seq C2 exon
GACCTGGCACTTGGAACTGATGCAGAAGGACAGAAGGTGAAAGATTCCATGCGAGTACTCCTTCCAGTTCTACTCAACAAAAATCATGATAATTGTGATAAAATAAGAGCAATTCTACTTTATATCTTCAGTATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116266-'37-33,'37-31,39-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(3.9=100)
A:
PF0099518=Sec1=FE(4.8=100)
C2:
PF0099518=Sec1=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTAGTGCTCTTACCCAGCT
R:
CATGATTTTTGTTGAGTAGAACTGGA
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains