BtaEX0035220 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030384 | SURF1
Description
surfeit 1 [Source:HGNC Symbol;Acc:HGNC:11474]
Coordinates
chr11:104317675-104318915:-
Coord C1 exon
chr11:104318864-104318915
Coord A exon
chr11:104317838-104317971
Coord C2 exon
chr11:104317675-104317757
Length
134 bp
Sequences
Splice sites
3' ss Seq
CATGCTGTGACATCTCCTAGGGT
3' ss Score
7.07
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCCCGGCCAGCGTCGTCTGGAGGAGCGTCCTGGGGATCGCCCCGCGCGCAG
Seq A exon
GGTTGGCCTGGAGGCCCCGCAGGTGTGGCAGCTCTTCAGCCGAAGCAACTGCCACAAAAACCGAAGATGAGTCCTTCCTCCGCTGGTTTCTGCTTCTCATTCCTGTGACTGCCTTTGGCCTGGGGACGTGGCAG
Seq C2 exon
GTCCAGCGTCGGAAGTGGAAGCTACAGCTGATCGCAGAGCTAGAGTCCAGAGTTATGGCCGAGCCCATCCCACTGCCCGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030384_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.267 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0210410=SURF1=PU(6.4=31.1)
C2:
PF0210410=SURF1=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGCGTCGTCTGGAG
R:
TCTGCGGGCAGTGGGATG
Band lengths:
130-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development