GgaEX6015323 @ galGal3
Exon Skipping
Gene
ENSGALG00000003187 | SURF1_CHICK
Description
NA
Coordinates
chr17:7537983-7538761:-
Coord C1 exon
chr17:7538683-7538761
Coord A exon
chr17:7538437-7538564
Coord C2 exon
chr17:7537983-7538065
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTCATTGTGGTTCTCTGCAGACG
3' ss Score
9.58
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATATCACACTGCTTGCTCAGAAGAACATTTTTCGGGTTTCCCCGAACGAAAGCAGGTTCTGCTGTGACCCAGCAGGGAG
Seq A exon
ACGTTTGCCTGAGGCTCTGCAGCCCACGAAGCTCCACGACAGCCACCAGTGCAGCTGGAGAGGACGCCTGGCTGAAGTGGGGCCTCCTCCTCGTGCCCCTGACTGCATTCTGTCTCGGCACATGGCAG
Seq C2 exon
ATTCAGCGTCGAAAATGGAAATTAGATTTGATTGCCCAGCTGGCATCCAGACTTTCATCAGAGCCCATCCCTCTGACATTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003187-'1-4,'1-1,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0210410=SURF1=PU(6.4=32.6)
C2:
PF0210410=SURF1=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCACACTGCTTGCTCAGA
R:
TCTAATGTCAGAGGGATGGGCT
Band lengths:
162-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]