HsaEX0062967 @ hg19
Exon Skipping
Gene
ENSG00000148290 | SURF1
Description
surfeit 1 [Source:HGNC Symbol;Acc:11474]
Coordinates
chr9:136221514-136223175:-
Coord C1 exon
chr9:136223124-136223175
Coord A exon
chr9:136221679-136221812
Coord C2 exon
chr9:136221514-136221596
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGTGTTGTGAAACTCTCCAGGGG
3' ss Score
3.99
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCCCGGCCAGCGCCGCCTGGAGGAGCGTCCTCAGGGTCTCCCCGCGCCCAG
Seq A exon
GGGTGGCCTGGAGGCCAAGCAGATGTGGCAGTTCTGCAGCAGAAGCATCTGCCACAAAAGCGGAAGATGACTCCTTTCTTCAGTGGGTCCTGCTCCTCATCCCTGTGACTGCCTTTGGCTTGGGGACATGGCAG
Seq C2 exon
GTCCAGCGTCGGAAGTGGAAGCTGAACCTGATTGCAGAGTTGGAGTCCAGAGTTCTGGCTGAGCCTGTCCCTCTGCCAGCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148290-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.078 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0210410=SURF1=PU(6.4=31.1)
C2:
PF0210410=SURF1=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTCCTCAGGGTCTCC
R:
GGCAGAGGGACAGGCTCA
Band lengths:
106-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)