MmuEX0045778 @ mm9
Exon Skipping
Gene
ENSMUSG00000015790 | Surf1
Description
surfeit gene 1 [Source:MGI Symbol;Acc:MGI:98443]
Coordinates
chr2:26770952-26771526:-
Coord C1 exon
chr2:26771475-26771526
Coord A exon
chr2:26771116-26771249
Coord C2 exon
chr2:26770952-26771034
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTTGTAAAACTTCCTCCAGGGA
3' ss Score
6.82
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GCCCAGTTCTGCGCTGTCAGGAGGAGCGTCTTTGGGTTTTCTGTCCGCTCAG
Seq A exon
GGATGGTCTGTAGGCCACGCAGGTGTTGCAGTTCTACTGCTGAAACAGCCGCCGCTAAAGCAGAGGACGATTCTTTTCTCCAGTGGTTCCTGCTTTTAATCCCTGCTACTGCTTTTGGCCTGGGGACTTGGCAG
Seq C2 exon
GTCCAACGTCGGAAATGGAAGCTGAAACTTATTGCAGAATTAGAGTCTCGAGTCATGGCTGAGCCCATCCCTCTACCAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015790-'1-6,'1-4,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0210410=SURF1=PU(6.4=31.1)
C2:
PF0210410=SURF1=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTTCTGCGCTGTCAG
R:
CTGGTAGAGGGATGGGCTCAG
Band lengths:
130-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: