BtaEX0035251 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020243 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr8:101644589-101646845:-
Coord C1 exon
chr8:101646675-101646845
Coord A exon
chr8:101645131-101645304
Coord C2 exon
chr8:101644589-101644708
Length
174 bp
Sequences
Splice sites
3' ss Seq
AAGTAGTTGTCACATTCTAGGCA
3' ss Score
2.62
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
ATTGCCCGTCTTTAGAAGGATCAGTACCTCATCTGCGAACTGCATCAAGAGACGTAAAGCCAGGCTCCAAAATCAGTCTGTTCTGTGATCCAGGCTTCCAGATGGTCGGGAACTCTGTGCAGTATTGCCTGAATCAAGGACAGTGGACACAACCATTGCCTCGCTGTGAAC
Seq A exon
GCATTAGCTGTGGGGTGCCACCCCCTTTGGAGAATGGCTTCTATTCAGCTGAGGACTTCCATGCTGGCAGCACAGTGACCTACCAATGCAACAATGGCTACTATTTGTTGGGTGATTCAAGGATGTTCTGTACGGATAATGGGAGCTGGAATGGCATTTCACCATCGTGTCTTG
Seq C2 exon
ATGTCGATGAATGTGCAGTTGGGTCAGACTGCAGTGAGCACGCCTCCTGCCTGAATACAAATGGATCCTACGTCTGCTCATGTATCCCGCCCTACACAGGAGATGGGAAAAACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020243-'33-38,'33-37,34-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(94.8=94.8)
A:
PF0008415=Sushi=WD(100=91.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAACTGCATCAAGAGACGT
R:
TTCCCATCTCCTGTGTAGGGC
Band lengths:
246-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development