DreEX6004980 @ danRer10
Exon Skipping
Gene
ENSDARG00000013526 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr7:24062165-24063155:+
Coord C1 exon
chr7:24062165-24062335
Coord A exon
chr7:24062627-24062800
Coord C2 exon
chr7:24063036-24063155
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGTGTTTATCTGTAGGTG
3' ss Score
11.71
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACTGCCCCCTGGTGGAGACTTCTGTTCCTCATCTGCTCTCATCCAGTAAAGCTGTGAGCCCAGGCTCTAAGGTGCAGTTCTCTTGTAGTCCCGGCTTCTATCTAGTGGGGGAGCCAGTGCAGCTGTGCTTAAACAGAGGCCAGTGGAGCCACGCAGAGCCAATATGTGAAC
Seq A exon
GTGTGGAATGTGGTCCTCCACCTGACCTGGAGCATGGACAATATCATGGAGAGGATTTCTATGCTGGGAGCTCAGTGCTTTATCAATGCAAACCAGGTTTCTACTTGCTCGGGGAGAGTAAGATGCAGTGTACTAATAATGGTAAATGGATTGGCAACCCACCTGCTTGTCTGG
Seq C2 exon
ATGTGGATGAATGTTCTTTGGGCTCTGAATGTGATGAACATGCTAGTTGCCAGAACACTGATGGCTCGCATATATGCACCTGCATAGCTCCTTACAGTGGGGATGGAAGAAACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013526-'24-28,'24-27,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(94.8=94.8)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF129472=EGF_3=WD(100=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTAAAGCTGTGAGCCCAGG
R:
TGCAGTTTCTTCCATCCCCAC
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]