MmuEX6093663 @ mm10
Exon Skipping
Gene
ENSMUSG00000028369 | Svep1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:MGI Symbol;Acc:MGI:1928849]
Coordinates
chr4:58087728-58089522:-
Coord C1 exon
chr4:58089352-58089522
Coord A exon
chr4:58088218-58088391
Coord C2 exon
chr4:58087728-58087847
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCCTTGCCGTCCTGTTCCAGGCA
3' ss Score
9.94
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
ATTGTCCGTCTTTAGAAGGATCCGTGCCTCACCTGAGACCTGCATCAGGAAATCGAAAGCCAGGCTCCAAAGTCAGTCTGTTCTGTGATCCGGGCTTCCAGATGGTTGGGAATCCTGTGCAGTATTGTCTGAACCAAGGGCAGTGGACACAACCACTCCCCCACTGTGAAC
Seq A exon
GCATTCGCTGTGGGCTGCCTCCCGCCTTGGAGAATGGCTTCTACTCAGCCGAGGACTTCCATGCGGGCAGCACGGTGACCTATCAGTGCACCAGTGGCTACTACCTGCTGGGTGATTCCCGAATGTTCTGCACAGACAACGGGAGCTGGAACGGCATTTCACCATCCTGTCTCG
Seq C2 exon
ATGTCGATGAGTGTGCAGTCGGCTCGGACTGTAGTGAGCACGCCTCCTGCCTGAACACCAACGGATCCTACGTATGTTCCTGTAACCCACCATACACGGGAGATGGGAAAAACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028369-'35-36,'35-35,36-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(94.8=94.8)
A:
PF0008415=Sushi=WD(100=91.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCTGAGACCTGCATCA
R:
ATCTCCCGTGTATGGTGGGTT
Band lengths:
249-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types