GgaEX6051008 @ galGal4
Exon Skipping
Gene
ENSGALG00000015721 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chrZ:66402118-66406060:-
Coord C1 exon
chrZ:66405890-66406060
Coord A exon
chrZ:66404528-66404701
Coord C2 exon
chrZ:66402118-66402237
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCACACACACTGCAGGAA
3' ss Score
7.34
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
ATTGTCCATCTTTGCAAGGATCTGTACCACATCTGCGTGCCTCTTCATCTGATTTAAAGCCAGGGTCAAAAGTCAGCCTTTCCTGTGACCCAGGCTTCCAGATAGTGGGAAACTCTGTCCAGCACTGCCTTAACATGGGACAGTGGACGCGACCCTTTCCACGCTGTGAAA
Seq A exon
GAATCAGCTGTGGAGTACCTCCACCTTTAGAGAATGGCGGCTATGCTGCTGAGGACTTTTTTGCTGGCAGCACCATTACCTATCAGTGCAACAGTGGCTACTATTTGCTGGGTGACTTTGAGATGTTCTGCAGGGACAATGGGAGCTGGAGCAGCATTTCACCATCATGCCTGG
Seq C2 exon
ATGTTGATGAATGTGCTGTTGGATCAGATTGTGATGAGCATGCATCCTGTCTCAATACAAACGGATCCTATGTTTGCACCTGCATTCCACCTTACACAGGAGATGGTAAAAAATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721-'38-41,'38-40,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(94.8=94.8)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF129472=EGF_3=WD(100=85.4),PF0008415=Sushi=PU(3.3=4.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTACCACATCTGCGTGC
R:
TGTAAGGTGGAATGCAGGTGC
Band lengths:
248-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]