RnoEX0087845 @ rn6
Exon Skipping
Gene
ENSRNOG00000033110 | Svep1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:RGD Symbol;Acc:1588987]
Coordinates
chr5:75190019-75191815:-
Coord C1 exon
chr5:75191645-75191815
Coord A exon
chr5:75190570-75190743
Coord C2 exon
chr5:75190019-75190138
Length
174 bp
Sequences
Splice sites
3' ss Seq
AACTTGCTGCCCTGTTCCAGGCA
3' ss Score
7.45
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
ATTGCCCATCTTTAGAAGGGTCCGTGCCTCACCTGAGACCTGCATCAGGAGATCGAAAGCCAGGTTCCAAAGTCAGTCTGTTCTGTGACCCGGGCTTCCAGATGGTCGGGAATCCGGTGCAGTATTGTTTGAACCAAGGGCAGTGGTCACAGCCACTCCCTCACTGTGAAC
Seq A exon
GCATTCGCTGTGGGCTGCCTCCCACCTTGGAGAATGGCTTCTATTCAGCCGAGGACCTCCATGCTGGCAGCACAGTGACCTATCAGTGCACCAGTGGCTACTACCTGTTGGGTGACTCCAGAATGTTCTGTACGGACAACGGGAGCTGGAACGGCATTTCTCCATCCTGTCTCG
Seq C2 exon
ATGTTGATGAGTGTGCAGTCGGCTCGGACTGTAGTGAGCACGCCTCCTGCCTGAACACCAACGGATCCTACATATGCTCGTGCAAGCCCCCGTACACGGGAGATGGGAAAAACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033110_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(94.8=94.8)
A:
PF0008415=Sushi=WD(100=91.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGAAGGGTCCGTGCCTCA
R:
GCACGAGCATATGTAGGATCCG
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]