BtaEX0037172 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009132 | TMPRSS2
Description
Bos taurus transmembrane protease, serine 2 (TMPRSS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081585]
Coordinates
chr1:143235331-143246217:-
Coord C1 exon
chr1:143246147-143246217
Coord A exon
chr1:143241816-143242038
Coord C2 exon
chr1:143235331-143235417
Length
223 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTTAATCGTTTAGGGA
3' ss Score
8.44
5' ss Seq
CAAGTAGGG
5' ss Score
3.87
Exon sequences
Seq C1 exon
GTCAACTTGAACGTTCCAAATACCTCCCTTTACCCGATGCTGCTGATAACATCAGGATGGCTTTAAACTCA
Seq A exon
GGATCATCACCAGGTGTCGGGCCTTACTATGAGAACCATGGATACCAGCCGGAAAGCTTGTACCCTCAGCAGCCGCCCACGGCTCCCCCTGCTTTCGAGGTGTACCCCGCTCAGTACTACCCGCCCGTGGTGCCCCAGTACACCCCAAGGGTTCAGACGCACGCCTCGACACCTGTCATCTACAGGCAGCCCAAACCTCCATCCAGGACAGCGTGCACCTCAA
Seq C2 exon
AGACTAAGAAAGCCCTGTGCATCACCTTCACCCTGGTGGTCCTGCTGGCAGGAGCAATCCTTGCCGCCGTCCTCCTCTGGAAGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009132-'0-4,'0-2,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126692=P12=PU(23.8=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTGAACGTTCCAAATACCTCC
R:
TGTACTTCCAGAGGAGGACGG
Band lengths:
156-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development