GgaEX6004401 @ galGal3
Exon Skipping
Gene
ENSGALG00000016144 | F1NY88_CHICK
Description
NA
Coordinates
chr1:112402499-112403754:-
Coord C1 exon
chr1:112403737-112403754
Coord A exon
chr1:112402904-112403105
Coord C2 exon
chr1:112402499-112402582
Length
202 bp
Sequences
Splice sites
3' ss Seq
CTCTTAACATTACCATTTAGAAT
3' ss Score
6.02
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATACACTGCAAGGCAGGT
Seq A exon
AATCCACCACCATACTACGAAAATCATGGCTTCCAGACAGAAAACTACTATTCTGCCAGGCCACAAGTAGGTGCTAACCCATATCCACAGTACTTTTCTACGAATGTTCCATCAGTGCCAACCTATATCCCAAGAGTTTCAACCCATCAGTCAAGCATTCCAGTAGCACCTCCATCCAGTTCGTCCAGGATGTGTTCATCAA
Seq C2 exon
GCATAAAGAAAATCGTAATAATTACATTATCCATTTTACTAGTCATCTGTTGTGCAATTGCTGCTTTCCTCATCTGGTATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016144-'2-1,'2-0,4-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]