RnoEX0092119 @ rn6
Exon Skipping
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38083297-38091079:-
Coord C1 exon
chr11:38091012-38091079
Coord A exon
chr11:38088534-38088753
Coord C2 exon
chr11:38083297-38083383
Length
220 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTCCCATCATTTAGGGG
3' ss Score
9.91
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCACCTGGAGGAAGCCACATACTGACCTCCTCATGCTGCTGACACAGGCAGGATGGCATTGAACTCA
Seq A exon
GGGTCACCTCCAGGAATTGGACCTTACTATGAGAACCACGGGTATCAGTCTGAGCACGTCTATTCCCCGAGGCCACCTGTGTCTCCCAGTGGCTACAACTTGTATCCAGCCCAGAGCTGCCCATCTCCAGTGCCCCAGTATGCTCCGAGAGTCACAACTCAAGCCTCAACACCTGCCATCCACATACAGCCCCGATCCTCAGGAACACTGTGCACCTCAA
Seq C2 exon
AATCTAAGAAATCCATGCTTGTCGCCCTGGCCCTGGGCACTGTCCTCGCCGGTGCTGCTGTGGCTGCTGGCTTGCTTTGGAAGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976-'7-3,'7-2,8-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.155 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAGGAAGCCACATACT
R:
AACTTCCAAAGCAAGCCAGCA
Band lengths:
150-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]