GgaEX6004401 @ galGal4
Exon Skipping
Gene
ENSGALG00000016144 | TMPRSS2
Description
transmembrane protease, serine 2 [Source:HGNC Symbol;Acc:HGNC:11876]
Coordinates
chr1:108309858-108311113:-
Coord C1 exon
chr1:108311096-108311113
Coord A exon
chr1:108310263-108310464
Coord C2 exon
chr1:108309858-108309941
Length
202 bp
Sequences
Splice sites
3' ss Seq
CTCTTAACATTACCATTTAGAAT
3' ss Score
6.02
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATACACTGCAAGGCAGGT
Seq A exon
AATCCACCACCATACTACGAAAATCATGGCTTCCAGACAGAAAACTACTATTCTGCCAGGCCACAAGTAGGTGCTAACCCATATCCACAGTACTTTTCTACGAATGTTCCATCAGTGCCAACCTATATCCCAAGAGTTTCAACCCATCAGTCAAGCATTCCAGTAGCACCTCCATCCAGTTCGTCCAGGATGTGTTCATCAA
Seq C2 exon
GCATAAAGAAAATCGTAATAATTACATTATCCATTTTACTAGTCATCTGTTGTGCAATTGCTGCTTTCCTCATCTGGTATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016144-'3-1,'3-0,5-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]