MmuEX6063690 @ mm10
Exon Skipping
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97591424-97599322:-
Coord C1 exon
chr16:97599255-97599322
Coord A exon
chr16:97596740-97596959
Coord C2 exon
chr16:97591424-97591510
Length
220 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTCCCATTGTTTAGGGG
3' ss Score
9.47
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTCACCTGGAGGAAGCCCCATACTGACCTCCTCATGCTGCTGACACAGGCAGGATGGCATTGAACTCA
Seq A exon
GGGTCACCTCCAGGAATCGGACCTTGCTATGAGAACCACGGGTATCAGTCTGAGCACATCTGTCCTCCGAGACCACCAGTGGCTCCCAATGGCTACAACTTGTATCCAGCCCAGTACTACCCATCTCCAGTGCCTCAGTATGCTCCGAGGATTACAACGCAAGCCTCAACATCTGTCATCCACACACATCCCAAGTCCTCAGGAGCACTGTGCACCTCAA
Seq C2 exon
AGTCTAAGAAATCGCTGTGTTTAGCCCTCGCCCTGGGCACTGTCCTCACGGGAGCTGCTGTGGCTGCTGTCTTGCTTTGGAGGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385-'12-5,'12-4,14-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGAAGCCCCATACTGA
R:
AACCTCCAAAGCAAGACAGCA
Band lengths:
148-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types