BtaEX0037174 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021518 | TMPRSS4
Description
Bos taurus transmembrane protease, serine 4 (TMPRSS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101973]
Coordinates
chr15:29193486-29217340:+
Coord C1 exon
chr15:29193486-29193726
Coord A exon
chr15:29214131-29214244
Coord C2 exon
chr15:29217188-29217340
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCCCTCCCCCTACAGATG
3' ss Score
13.45
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAATCACTCCTGGAAGACGGCAGTGGGAGGCACGCGCCAGCTACGCCAGGGGATAGAGATGCTGGACGCCGGGAACCACCAAGGCCTGCCCTGCACTTAGGGCTCCTCCAGCCAATGTTGCCTGGGGATCGCTGACCTGCTGGCCAGCCAGGGCCCGGTCCCGAGAGACCCTCATCCTGACTTGGGCTGGCGACCTCAGCTCCAGGCCATGGAAAATTCAGAAGATCGACGAGCCAGGGTG
Seq A exon
ATGTCACCCCCCTGCGCAAATCCCGCACCCCGTTGGAGATCTTCAAAAAAGTAGGGATCCCGATCATCGCAGCAGTGCTGATCCTGGCAACCATCATTGTGGTGGCCGTCCTCA
Seq C2 exon
TCAAGGTGATTCTGGACAGTTACTTCTTCTTCTGTGGGCAGCCCCTCCTCTTCATCCCAAGGGAGCAGGTGTGTGATGGCCACCAGGACTGTGCCTCGGGGGAGGATGAGAAGTACTGCGTCAAGAAACTCCCCGACGGACCTCCAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021518_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=63.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGATAGAGATGCTGGACG
R:
TCCCTTGGGATGAAGAGGAGG
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development