DreEX0080006 @ danRer10
Exon Skipping
Gene
ENSDARG00000103117 | tmprss4a
Description
transmembrane protease, serine 4a [Source:ZFIN;Acc:ZDB-GENE-061103-631]
Coordinates
chr15:12513689-12518401:+
Coord C1 exon
chr15:12513689-12513743
Coord A exon
chr15:12514176-12514310
Coord C2 exon
chr15:12518249-12518401
Length
135 bp
Sequences
Splice sites
3' ss Seq
GATGTCATGTAAATTTTCAGAGC
3' ss Score
6.47
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ACTAAAACCCAGGTTCCTGAGGAAAACACGACACCCTTAAACCCACCAAAGCCAG
Seq A exon
AGCCTGCAAAACGCACAAAACTCATGACTGCCCCAAAGACTCAGAAGCCTAAAGGGCCGAACAAGAAGAAGATCATCATTACAGTCCTGATGGTGGTGGTCGTTCTGGCAATTTTGGCTGTGGCCGCTTTCCTCA
Seq C2 exon
TCAAGCAGTTGATCGACAGCAAGTATTTCTTCTGCACAAAATCATGGAAGTTCATCCCGCTGGAGAAGGTGTGCGATGGGAAAAATGACTGTAGTGAAGCCGAAGATGAGTCTGCCTGTGTCACCATGTTTAAACCCAACACCACCTTCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103117-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.293 C2=0.000
Domain overlap (PFAM):
C1:
PF142831=DUF4366=FE(19.4=100),PF044157=DUF515=PU(16.7=57.9)
A:
PF142831=DUF4366=FE(47.3=100),PF044157=DUF515=FE(66.7=100),PF0058415=SecE=PU(77.1=60.0)
C2:
PF142831=DUF4366=PD(8.6=15.7),PF044157=DUF515=PD(12.1=15.7),PF0058415=SecE=PD(17.1=11.8),PF0005713=Ldl_recept_a=WD(100=68.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCAGGTTCCTGAGGAAA
R:
GGGAAGGTGGTGTTGGGTTTA
Band lengths:
202-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]