RnoEX0092125 @ rn6
Exon Skipping
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49481641-49487557:-
Coord C1 exon
chr8:49487524-49487557
Coord A exon
chr8:49483192-49483305
Coord C2 exon
chr8:49481641-49481793
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTTTCTCCTCGCAGATG
3' ss Score
13.52
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GAGCCAGACAGTGGCCAACCCCTGAACAACCATG
Seq A exon
ATGTCCCTCCCTTTCGCAAACCCCGAAGTCCCCTGGAGACCTTCAAAAAGGTGGGGATCCCCATCATCGCGGTGATTCTGAGCCTGATAGCCCTCGGGATTGTGGCCCTCCTCA
Seq C2 exon
TCAAAGTGGTTCTGGATAAATACTACTTCATCTGCGGAAATCCCCTGACCTTCATTCCGAGGGGCCAGATGTGTGATGGCCACCTTGACTGTGCCTCGGGGGAGGATGAGGAACACTGTGTCAAGAACTTCCCTGAAAAGCCTGGAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650-'3-6,'3-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.103 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=63.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGGCCAACCCCTGAA
R:
TCACTCCAGGCTTTTCAGGGA
Band lengths:
178-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]