MmuEX6065500 @ mm10
Exon Skipping
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:45184241-45190162:-
Coord C1 exon
chr9:45190129-45190162
Coord A exon
chr9:45185815-45185928
Coord C2 exon
chr9:45184241-45184393
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTTTCTCCTTGCAGATA
3' ss Score
14.09
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GAGTCAGACAGTGGCCAACCCCTCAACAACCGTG
Seq A exon
ATATTGTTCCCTTTCGCAAACCCCGAAGGCCCCAGGAGACCTTCAAAAAGGTGGGGATCCCCATCATTGCAGTGCTGCTGAGCCTGATAGCCCTCGTGATTGTGGCCCTTCTCA
Seq C2 exon
TCAAGGTGATTCTGGATAAATACTACTTCATCTGCGGCAGTCCCCTGACCTTCATTCAGAGGGGCCAGTTGTGTGACGGCCACCTTGACTGCGCCTCAGGGGAGGATGAGGAACACTGTGTCAAGGACTTCCCTGAAAAGCCCGGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091-'3-4,'3-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.163 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=61.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGACAGTGGCCAACC
R:
CTGCCACTCCGGGCTTTTC
Band lengths:
187-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types