GgaEX7010395 @ galGal4
Exon Skipping
Gene
ENSGALG00000007406 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:HGNC:11878]
Coordinates
chr24:5435822-5436314:+
Coord C1 exon
chr24:5435822-5435852
Coord A exon
chr24:5435933-5436046
Coord C2 exon
chr24:5436162-5436314
Length
114 bp
Sequences
Splice sites
3' ss Seq
CACCCCGCTCTGTGTTGCAGAAC
3' ss Score
9.85
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GACCCAGCCTCCGAGCGGCTGAACGGTGAAG
Seq A exon
AACCCGGCACGAGACACAAAGCCTCGGGGGCACAGCACTCCTGGAAGCGCATCGGCATCCCCATCCTGGTGACCGTGCTCATCCTCGCCTGCCTGGCTGCGGTTGGGCTCTTGG
Seq C2 exon
TCAAGGTTTATCTGGAGCACCACTACTTCATCTGCAAGCAGCCCCTGAAGCTGGTGCCGCTGGTGCAGGTTTGCAACGGGGAGGCGGACTGCCTGCACGGCGAGGATGAGACCAGCTGTCCCCAGCAGGTCCCTGAGGGGCCACAGGCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007406-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.256 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=65.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGCTGAACGGTGAAG
R:
CTCAGGGACCTGCTGGGG
Band lengths:
156-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]