BtaEX0037663 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009419 | TRIM29
Description
Bos taurus tripartite motif containing 29 (TRIM29), mRNA. [Source:RefSeq mRNA;Acc:NM_001099379]
Coordinates
chr15:31216814-31219782:-
Coord C1 exon
chr15:31219687-31219782
Coord A exon
chr15:31218336-31218434
Coord C2 exon
chr15:31216814-31216890
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGCTCTCTCTCTCCTGGCAGGCA
3' ss Score
10.98
5' ss Seq
CTGGTACCC
5' ss Score
3.61
Exon sequences
Seq C1 exon
GTAACTACACCTCCCGGGTCTGGGAATACTCCTCCACCATTCAGAGCTCTGACGACGTGCCTGCAGTGCAAGGCAGCTCCTCCTTCTCCCTGAAAG
Seq A exon
GCACTGGGAAAGTCCCCTATCAGTTCACCACCTTGGGACAGGCCACCACAGAGTTTTCCAAACCACTGGATGGCAGTGGGCTGTTTAAAAATAATCCTG
Seq C2 exon
GCTACCCTTCCCTCATCAGGAGCCAGAGCCCCAAGGCCCAGCCCCAGACCTGGAAATCTGGCAAGCAGACTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009419-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.235 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000012396fB7357
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGTCTGGGAATACTCCTC
R:
CTGCTTGCCAGATTTCCAGGT
Band lengths:
151-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development