HsaEX0067086 @ hg19
Exon Skipping
Gene
ENSG00000137699 | TRIM29
Description
tripartite motif containing 29 [Source:HGNC Symbol;Acc:17274]
Coordinates
chr11:119986046-119989029:-
Coord C1 exon
chr11:119988931-119989029
Coord A exon
chr11:119987667-119987768
Coord C2 exon
chr11:119986046-119986122
Length
102 bp
Sequences
Splice sites
3' ss Seq
AATGCCTCTCTCTCTCCCAGCAG
3' ss Score
8.69
5' ss Seq
CCGGTATCT
5' ss Score
4.44
Exon sequences
Seq C1 exon
GTAACTACACCTCCCGGGTCTGGGAGTACTCCTCCAGCATTCAGAACTCTGACAATGACCTGCCCGTCGTCCAAGGCAGCTCCTCCTTCTCCCTGAAAG
Seq A exon
CAGGCACTGGGAAAACCCCTTATCAGTTCACCACCTTGGGACAGGCCACTGCAGAGTTTTCCAAACCACTGGGTCGCAGTGGGCTGTCTAAAAATAATCCCG
Seq C2 exon
GCTATCCCTCCCTCATGCGGAGCCAAAGCCCCAAGGCCCAGCCCCAGACTTGGAAATCTGGCAAGCAGACTATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137699_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=0.571 C2=0.808
Domain overlap (PFAM):
C1:
PF0045712=Glyco_hydro_11=FE(39.8=100)
A:
NO
C2:
PF100184=Med4=FE(8.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGGTCTGGGAGTACTC
R:
TGCTTGCCAGATTTCCAAGTCT
Band lengths:
155-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)