RnoEX0093595 @ rn6
Exon Skipping
Gene
ENSRNOG00000021771 | Trim29
Description
tripartite motif-containing 29 [Source:RGD Symbol;Acc:1307858]
Coordinates
chr8:47692589-47695507:+
Coord C1 exon
chr8:47692589-47692684
Coord A exon
chr8:47693999-47694100
Coord C2 exon
chr8:47695431-47695507
Length
102 bp
Sequences
Splice sites
3' ss Seq
AACACCTCTCTCTCTCCCAGCAG
3' ss Score
8.14
5' ss Seq
CTGGTACCT
5' ss Score
4.11
Exon sequences
Seq C1 exon
GTAACTATACTTCCAGGGTCTGGGAGTACTCGTCCACTGTTCAGAACGCCGATGACATGCCCACTGTGCAAGGCAACTCCTCCTTCTCCCTGAAAG
Seq A exon
CAGGCACTGGGAAAGCCCCCTATCAGTTCACAACCTTGGGGCAGGCCACTGCAGAGTTTTCCAAGCCACTGGACCGCAGTGGGCTGTTTAAAAACAATCCTG
Seq C2 exon
GCTATCCCTCCCTCCTCCGGAGCCAGGTCCCCAAGGCCCAGCCTCAGACTTGGAAATCTGGCAAGCAGACTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021771_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.257 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGTACTCGTCCACTGT
R:
CAGTAGAGTCTGCTTGCCAG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]