MmuEX1026686 @ mm10
Exon Skipping
Gene
ENSMUSG00000032013 | Trim29
Description
tripartite motif-containing 29 [Source:MGI Symbol;Acc:MGI:1919419]
Coordinates
chr9:43329520-43332386:+
Coord C1 exon
chr9:43329520-43329615
Coord A exon
chr9:43330837-43330938
Coord C2 exon
chr9:43332310-43332386
Length
102 bp
Sequences
Splice sites
3' ss Seq
AACACCTCTCTCTCTCCCAGCAG
3' ss Score
8.14
5' ss Seq
CGGGTACCT
5' ss Score
4.35
Exon sequences
Seq C1 exon
GCAACTATACCTCCAGGGTCTGGGAGTACACATCCACGGTTCAGAATTCTGAGGATATGCCCACGGTGCAAGGCAACTCCTCCTTCTCCCTGAAAG
Seq A exon
CAGGCACTGGGAAAACCCCCTATCAGTTCACAACCCTGGGACAGGCCACTGCAGAGTTTTCCAAGCCCCTGGACCGCAGTGGGCTGTTTAAAAACAATCCGG
Seq C2 exon
GCTTTCCCTCCCTCCTCCGGAGCCAAGTTCCCAAGGCCCAGCCTCAGACTTGGAAATCTGGCAAGCAGACTCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032013_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.495 A=0.429 C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000034511fB18658
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTGGGAGTACACATCCA
R:
TGCTTGCCAGATTTCCAAGTCT
Band lengths:
148-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types