HsaEX0067086 @ hg38
Exon Skipping
Gene
ENSG00000137699 | TRIM29
Description
tripartite motif containing 29 [Source:HGNC Symbol;Acc:HGNC:17274]
Coordinates
chr11:120115338-120118321:-
Coord C1 exon
chr11:120118223-120118321
Coord A exon
chr11:120116959-120117060
Coord C2 exon
chr11:120115338-120115414
Length
102 bp
Sequences
Splice sites
3' ss Seq
AATGCCTCTCTCTCTCCCAGCAG
3' ss Score
8.69
5' ss Seq
CCGGTATCT
5' ss Score
4.44
Exon sequences
Seq C1 exon
GTAACTACACCTCCCGGGTCTGGGAGTACTCCTCCAGCATTCAGAACTCTGACAATGACCTGCCCGTCGTCCAAGGCAGCTCCTCCTTCTCCCTGAAAG
Seq A exon
CAGGCACTGGGAAAACCCCTTATCAGTTCACCACCTTGGGACAGGCCACTGCAGAGTTTTCCAAACCACTGGGTCGCAGTGGGCTGTCTAAAAATAATCCCG
Seq C2 exon
GCTATCCCTCCCTCATGCGGAGCCAAAGCCCCAAGGCCCAGCCCCAGACTTGGAAATCTGGCAAGCAGACTATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137699_MULTIEX1-6/10=5-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.568 C2=0.809
Domain overlap (PFAM):
C1:
PF0045712=Glyco_hydro_11=FE(39.8=100)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000341846fB7307
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGGTCTGGGAGTACTC
R:
TGCTTGCCAGATTTCCAAGTCT
Band lengths:
155-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development